Remove application link code

Description

All application link code should be removed except for the types defined in the JIRA plugin. These are needed for the upgrade task https://marvelution.atlassian.net/browse/JJI-211#icft=JJI-211

The method public URI getIconUri(); should be added to the DefaultManifest.

Also all remaining applink code should be marked as deprecated!

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Created December 1, 2015 at 1:42 PM
Updated March 17, 2016 at 12:36 PM
Resolved March 17, 2016 at 12:36 PM
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